Publications
2025
Neonatal fungi promote lifelong metabolic health through macrophage-dependent β cell development
Jennifer Hampton Hill, Rickesha Bell, Logan Barrios, Halli Baird, Kyla Ost, Morgan Greenewood, Josh K Monts, Erin Tracy, Casey H Meili, Tyson R Chiaro, Allison M Weis, Karen Guillemin, Anna E Beaudin, L Charles Murtaugh, W Zac Stephens, June L Round
Science. 2025 Mar 7;387(6738):eadn0953.
William W Tang, Ben Battistone, Kaylyn M Bauer, Allison M Weis, Cindy Barba, Muhammad Zaki Hidayatullah Fadlullah, Arevik Ghazaryan, Van B Tran, Soh-Hyun Lee, Z Busra Agir, Morgan C Nelson, Emmanuel Stephen Victor, Amber Thibeaux, Colton Hernandez, Jacob Tantalla, Aik C Tan, Dinesh Rao, Matthew Williams, Micah J Drummond, Ellen J Beswick, June L Round, H Atakan Ekiz, Warren P Voth, Ryan M O’Connell
Cell Reports. 2025 Feb 25;44(2):115301. Epub 2025 Feb 12.
Michaela A Murphy, D Garrett Brown, Rickesha S Bell, Allison M Weis, Logan A Barrios, W Zac Stephens, June L Round
Microbiology Resource Announcements. 2025 Jan 16;14(1):e0072624.
Clec12a controls colitis by tempering inflammation and restricting expansion of specific commensals
Tyson R Chiaro, Morgan Greenewood, Kaylyn M Bauer, Kyla S Ost, Emmanuel Stephen-Victor, Michaela Murphy, Allison M Weis, Morgan C Nelson, Jennifer H Hill, Rickesha Bell, Warren Voth, Taylor Jackson, Kendra A Klag, Ryan M O’Connell, W Zac Stephens, June L Round
Cell Host & Microbe. 2025 Jan 8;33(1):89-103.e7
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2024
Genomes of diverse Clostridia isolated from a spore forming community in mice that were associated with protection against metabolic syndrome and obesity
AM Weis, KA Klag, R Bell, WZ Stephens, JL Round
Microbiology Resource Announcements 13 (7), e00351-24
Draft genome of a human-derived pks+ E. coli that caused spontaneous disseminated infection in a mouse
AM Weis, OCJ Matthews, MA Mulvey, JL Round
Microbiology Resource Announcements 13 (7), e00387-24
Colitis reduces active social engagement in mice and is ameliorated by supplementation with human microbiota members
DG Brown, M Murphy, R Cadeddu, R Bell, A Weis, T Chiaro, K Klag, ...
Nature Communications 15 (1), 2769
CD11c+ myeloid cell exosomes reduce intestinal inflammation during colitis
KM Bauer, MC Nelson, WW Tang, TR Chiaro, DG Brown, A Ghazaryan, ...
JCI insight 7 (19), e159469
2022
Epithelial-myeloid exchange of MHC class II constrains immunity and microbiota composition
WZ Stephens, JL Kubinak, A Ghazaryan, KM Bauer, R Bell, K Buhrke, ...
Cell reports 37 (5)
2021. Microbiota-antibody interactions that regulate gut homeostasis
AM Weis, JL Round
Cell host & microbe 29 (3), 334-346
JJ Miller, BC Weimer, R Timme, CHM Lüdeke, JB Pettengill, DJD Bandoy, ...
Applied and environmental microbiology 87 (3), e01403-20
2021. Insular microbiogeography: Three pathogens as exemplars
JH Kaufman, CA Elkins, M Davis, AM Weis, BC Huang, MK Mammel, ...
Current issues in molecular biology 36 (1), 89-108
2020. Low heterozygosity is associated with vector‐borne disease in crows
AK Townsend, CC Taff, SS Wheeler, AM Weis, MG Hinton, ML Jones, ...
Ecosphere 9 (10), e02407
2018. Commensal regulation of T cell survival through Erdr1
AM Weis, R Soto, JL Round
Gut Microbes 9 (5), 458-464
SJ Lawton, AM Weis, BA Byrne, H Fritz, CC Taff, AK Townsend, ...
Journal of Veterinary Diagnostic Investigation 30 (3), 354-361
2018. The journey of Campylobacter: a genomic analysis of a successful zoonotic pathogen
AM Weis, BC Weimer
Atlas of Science
2017. Draft Genome Sequences of 1,183 Salmonella Strains from the 100K Pathogen Genome Project
N Kong, M Davis, N Arabyan, BC Huang, AM Weis, P Chen, K Thao, W Ng, ...
Genome announcements 5 (28), 10.1128/genomea. 00518-17
N Arabyan, AM Weis, BC Huang, BC Weimer
Genome Announcements 5 (19), 10.1128/genomea. 00341-17
2017. Shigella draft genomes: resources for food safety and public health
AM Weis, B Gilpin, BC Huang, N Kong, P Chen, BC Weimer
Genome Announcements 5 (16)
2017. Draft genome sequence of multidrug-resistant abortive Campylobacter jejuni from Northern California
AM Weis, KA Clothier, BC Huang, N Kong, BC Weimer
Genome announcements 5 (15), 10.1128/genomea. 00171-17
2017. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains
JL Draper, LM Hansen, DL Bernick, S Abedrabbo, JG Underwood, ...
MBio 8 (1), 10.1128/mbio. 02321-16
AM Weis, BC Huang, DB Storey, N Kong, P Chen, N Arabyan, B Gilpin, ...
Genome announcements 5 (1), 10.1128/genomea. 00925-16
2017. Campylobacter Genomics in Health and Disease
AM Weis
University of California, Davis
2017. Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing
SLBCWE Nguyet Kong, Whitney Ng, Kao Thao, Regina Agulto, Allison Weis ...
Standards in Genomic Sciences 12 (27)
AM Weis, DB Storey, CC Taff, AK Townsend, BC Huang, NT Kong, ...
Applied and Environmental Microbiology 82 (24), 7165-7175
CC Taff, AM Weis, S Wheeler, MG Hinton, BC Weimer, CM Barker, ...
Applied and Environmental Microbiology 82 (15), 4811-4820
MC Camargo, J Torres, JV Solnick, C Raley, D Storey, M Becker, R Torres, ...
Cancer Research 76 (14_Supplement), 3438-3438
2016. Salmonella Degrades the Host Glycocalyx Leading to Altered Infection and Glycan Remodeling
N Arabyan, D Park, S Foutouhi, AM Weis, BC Huang, CC Williams, ...
Scientific reports 6 (1), 29525
AM Weis, KA Clothier, BC Huang, N Kong, BC Weimer
AM Weis, WA Miller, BA Byrne, N Chouicha, WM Boyce, AK Townsend
Applied and environmental microbiology 80 (5), 1639-1644
TJ Dahlem, K Hoshijima, MJ Jurynec, D Gunther, CG Starker, AS Locke, ...
Public Library of Science 8 (8), e1002861
2012. C. elegans BLOC-1 Functions in Trafficking to Lysosome-Related Gut Granules
GJ Hermann, E Scavarda, AM Weis, DS Saxton, LL Thomas, R Salesky, ...
Public Library of Science 7 (8), e43043
2012. glo-3, a Novel Caenorhabditis elegans Gene, Is Required for Lysosome-Related Organelle Biogenesis
BM Rabbitts, MK Ciotti, NE Miller, M Kramer, AL Lawrenson, S Levitte, ...
Genetics 180 (2), 857-871